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Tutorials

Automatic Imaris 10 Filament Tracer Tree Autopath Walkthrough

Author: Matthew Gastinger

Published: 01 Feb 2023 · Last updated: 07 Mar 2023

Learn how to automatically trace your neurons and filamentous structures in Imaris.

In this tutorial, our Imaris Application and Technical Support Specialist - Matthew Gastinger, PhD will walk you through the new Imaris 10 - AI powered workflow for tracing neurons and other filamentous structures. In this video Matthew covers:

  • New and improved filament tracer algorithms (Faster, multi-threaded, AI-powered, more flexibility)
  • Soma detection (Size estimation in the Surpass mode)
  • Multiscale Seed Points
  • Machine Learning Seed Point Detection (perfect for datasets with an intense background)
  • NEW estimation for Filament segment diameters (Faster and Simpler)
  • NEW machine learning segment classification (AI based filtering of incorrect segments)
  • NEW Post-segment filter

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